Otophysa
3,392 of 10,046 species (34%) have genetic data.
Contents
| Taxon | Rank | Sampled / total | Sampling | Mean λDR |
|---|---|---|---|---|
| Characiphysae | Superorder | 1,689 / 5,879 | 0.18 | |
| Cypriniphysae | Superorder | 1,703 / 4,167 | 0.20 |
Species
Largest genera
Sampled species out of the total in each genus:
- Barbus 72/309
- Schistura 25/193
- Corydoras 118/159
- Trichomycterus 16/158
- Astyanax 25/140
Familiar species
Well-known and model species in Otophysa. Species with genetic data are in bold.
- Astyanax mexicanus (Mexican tetra)
- Carassius auratus (goldfish)
- Cyprinus carpio (common carp)
- Danio rerio (zebrafish)
- Electrophorus electricus (electric eel)
- Ictalurus punctatus (channel catfish)
- Paracheirodon innesi (neon tetra)
- Pygocentrus nattereri (red-bellied piranha)
All species
Otophysa has too many species to list on this page. The full list is available as a CSV file, or browse the taxa listed under Contents.
Gene coverage
Share of the 3,392 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| cytb | 2,537 | 75% |
| coi | 1,874 | 55% |
| 16s | 1,359 | 40% |
| rag1 | 1,341 | 40% |
| rag2 | 998 | 29% |
| 12s | 765 | 23% |
| rhodopsin | 656 | 19% |
| nd4 | 520 | 15% |
| myh6 | 439 | 13% |
| sh3px3 | 162 | 5% |
| enc1 | 127 | 4% |
| nd2 | 127 | 4% |
| glyt | 108 | 3% |
| ptr | 57 | 2% |
| plagl2 | 53 | 2% |
| tbr1 | 43 | 1% |
| zic1 | 36 | 1% |
| sreb2 | 28 | 1% |
| sidkey | 2 | <1% |
| 4c4 | 1 | <1% |
| ficd | 1 | <1% |
| panx2 | 1 | <1% |
| svep1 | 1 | <1% |
| vcpip | 1 | <1% |
| hoxc6a | 0 | 0% |
| kiaa1239 | 0 | 0% |
| ripk4 | 0 | 0% |
Enclosed taxa
2 superorders, 4 orders, 7 suborders, 77 families
- Superorder
- Characiphysae
- Cypriniphysae
- Order
- Characiformes
- Gymnotiformes
- Siluriformes
- Cypriniformes
- Suborder
- Characoidei
- Citharinoidei
- Gymnotoidei
- Sternopygoidei
- Diplomystoidei
- Loricaroidei
- Siluroidei
- Family
- Acestrorhynchidae
- Alestidae
- Anostomidae
- Bryconidae
- Chalceidae
- Characidae
- Chilodontidae
- Crenuchidae
- Ctenoluciidae
- Curimatidae
- Cynodontidae
- Erythrinidae
- Gasteropelecidae
- Hemiodontidae
- Hepsetidae
- Iguanodectidae
- Lebiasinidae
- Parodontidae
- Prochilodontidae
- Serrasalmidae
- Triportheidae
- Citharinidae
- Distichodontidae
- Gymnotidae
- Apteronotidae
- Hypopomidae
- Rhamphichthyidae
- Sternopygidae
- Diplomystidae
- Astroblepidae
- Callichthyidae
- Loricariidae
- Nematogenyidae
- Scoloplacidae
- Trichomycteridae
- Akysidae
- Amblycipitidae
- Amphiliidae
- Anchariidae
- Ariidae
- Aspredinidae
- Auchenipteridae
- Austroglanididae
- Bagridae
- Cetopsidae
- Chacidae
- Clariidae
- Claroteidae
- Cranoglanididae
- Doradidae
- Erethistidae
- Heptapteridae
- Heteropneustidae
- Horabagridae
- Ictaluridae
- Lacantuniidae
- Malapteruridae
- Mochokidae
- Pangasiidae
- Pimelodidae
- Plotosidae
- Pseudopimelodidae
- Schilbeidae
- Siluridae
- Sisoridae
- Balitoridae
- Barbuccidae
- Botiidae
- Catostomidae
- Cobitidae
- Cyprinidae
- Ellopostomatidae
- Gyrinocheilidae
- Nemacheilidae
- Psilorhynchidae
- Serpenticobitidae
- Vaillantellidae
Fossil calibrations
- Total group Characiformes (Characiformes indet.†) 93.9 Ma
- MRCA Sternopygus and Apteronotus (Humboldtichthys kirschbaumi†) 7.246 Ma
- subset Serrasalmidae (Megapiranha paranensis†) 6 Ma
- Total group Lignobrycon (Lignobrycon ligniticus†) 24.5 Ma
- Total group Spintherobolus (Megacheirodon unicus†) 24.5 Ma
- Total group Salminus (Salminus noriegai†) 7.246 Ma
- Crown group Callichthyidae (Corydoras revelatus†) 39.5 Ma
- Total group Loricariidae (Taubateia paraiba†) 24.5 Ma
- Total group Pangasiidae (Cetopangasius chaetobranchus†) 5.333 Ma
- Total group Ictaluridae (Astephus sp.†) 59.36 Ma
- Total group Ameiurus (Ameiurus pectinatus†) 33.97 Ma
- Total group Pylodictis (Pylodictis olivaris†) 16.3 Ma
- Crown Brachyplatystoma (Brachyplatystoma promagdlaena†) 12.8 Ma
- MRCA Chrysichthys (Chrysichthys mahengeensis†) 45 Ma
- Total group Synodontis (Synodontis sp.†) 28.1 Ma
- Crown Catostomidae (Amyzon aggregatum†) 48.88 Ma
- Total group Cyprinini (Cyprinus maomingensis†) 40.14 Ma
- Total group Cyprinus (Huashancyprinus robustispinus†) 23.03 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Otophysa data (JSON format)
Species list for Otophysa (CSV format)
Phylogenies
Sequence data
Nexus file for Otophysa (includes character partitions and phylogeny)