Cypriniphysae
1,703 of 4,167 species (41%) have genetic data.
Contents
| Taxon | Rank | Sampled / total | Sampling | Mean λDR |
|---|---|---|---|---|
| Cyprinidae* | Family | 1,368 / 2,950 | 0.20 | |
| Nemacheilidae | Family | 70 / 603 | 0.20 | |
| Balitoridae* | Family | 46 / 246 | 0.14 | |
| Cobitidae* | Family | 127 / 230 | 0.13 | |
| Catostomidae | Family | 68 / 81 | 0.20 | |
| Botiidae* | Family | 15 / 25 | 0.12 | |
| Psilorhynchidae | Family | 2 / 19 | 0.06 | |
| Gyrinocheilidae | Family | 3 / 3 | 0.03 | |
| Serpenticobitidae | Family | 1 / 3 | 0.06 | |
| Vaillantellidae | Family | 1 / 3 | 0.04 | |
| Barbuccidae | Family | 1 / 2 | 0.05 | |
| Ellopostomatidae | Family | 1 / 2 | 0.04 |
Taxa marked with * were not recovered as monophyletic in our phylogenetic analysis.
Species
Largest genera
Sampled species out of the total in each genus:
- Barbus 72/309
- Schistura 25/193
- Triplophysa 9/137
- Garra 33/107
- Labeo 34/103
Familiar species
Well-known and model species in Cypriniphysae. Species with genetic data are in bold.
- Carassius auratus (goldfish)
- Cyprinus carpio (common carp)
- Danio rerio (zebrafish)
All species
Cypriniphysae has too many species to list on this page. The full list is available as a CSV file, or browse the taxa listed under Contents.
Gene coverage
Share of the 1,703 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| cytb | 1,490 | 87% |
| coi | 946 | 56% |
| rag1 | 755 | 44% |
| rhodopsin | 607 | 36% |
| 16s | 427 | 25% |
| nd4 | 303 | 18% |
| 12s | 246 | 14% |
| rag2 | 157 | 9% |
| enc1 | 119 | 7% |
| nd2 | 110 | 6% |
| sh3px3 | 99 | 6% |
| glyt | 84 | 5% |
| myh6 | 49 | 3% |
| tbr1 | 35 | 2% |
| zic1 | 28 | 2% |
| ptr | 22 | 1% |
| plagl2 | 18 | 1% |
| sreb2 | 16 | 1% |
| sidkey | 2 | <1% |
| 4c4 | 1 | <1% |
| ficd | 1 | <1% |
| vcpip | 1 | <1% |
| hoxc6a | 0 | 0% |
| kiaa1239 | 0 | 0% |
| panx2 | 0 | 0% |
| ripk4 | 0 | 0% |
| svep1 | 0 | 0% |
Enclosed taxa
Fossil calibrations
- Crown Catostomidae (Amyzon aggregatum†) 48.88 Ma
- Total group Cyprinini (Cyprinus maomingensis†) 40.14 Ma
- Total group Cyprinus (Huashancyprinus robustispinus†) 23.03 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Cypriniphysae data (JSON format)
Species list for Cypriniphysae (CSV format)
Phylogenies
Sequence data
Phylip sequences for Cypriniphysae
Nexus file for Cypriniphysae (includes character partitions and phylogeny)