Scombriformes
138 of 267 species (52%) have genetic data.
Contents
| Taxon | Rank | Sampled / total | Sampling | Mean λDR |
|---|---|---|---|---|
| Scombridae | Family | 47 / 54 | 0.12 | |
| Trichiuridae | Family | 15 / 44 | 0.12 | |
| Chiasmodontidae | Family | 5 / 32 | 0.08 | |
| Centrolophidae | Family | 16 / 31 | 0.10 | |
| Gempylidae* | Family | 14 / 24 | 0.05 | |
| Bramidae | Family | 10 / 20 | 0.09 | |
| Nomeidae | Family | 9 / 16 | 0.07 | |
| Stromateidae | Family | 11 / 15 | 0.04 | |
| Caristiidae | Family | 0 / 9 | ||
| Ariommatidae | Family | 3 / 8 | 0.06 | |
| Arripidae | Family | 2 / 4 | 0.04 | |
| Scombropidae | Family | 2 / 3 | 0.04 | |
| Tetragonuridae | Family | 2 / 3 | 0.04 | |
| Amarsipidae | Family | 0 / 1 | ||
| Icosteidae | Family | 1 / 1 | 0.04 | |
| Pomatomidae | Family | 1 / 1 | 0.04 | |
| Scombrolabracidae | Family | 0 / 1 |
Taxa marked with * were not recovered as monophyletic in our phylogenetic analysis.
Species
Largest genera
Sampled species out of the total in each genus:
- Scomberomorus 15/18
- Pseudoscopelus 0/16
- Benthodesmus 2/11
- Cubiceps 5/10
- Trichiurus 3/9
Familiar species
Well-known and model species in Scombriformes. Species with genetic data are in bold.
- Thunnus thynnus (Atlantic bluefin tuna)
All species
Species with genetic data are in bold.
Species list
- Ariomma bondi
- Ariomma indicum
- Ariomma melanum
- Arripis georgianus
- Arripis trutta
- Brama australis
- Brama brama
- Brama japonica
- Pterycombus brama
- Pterycombus petersii
- Taractes asper
- Taractes rubescens
- Taractichthys longipinnis
- Taractichthys steindachneri
- Xenobrama microlepis
- Centrolophus niger
- Hyperoglyphe antarctica
- Hyperoglyphe japonica
- Hyperoglyphe perciformis
- Icichthys australis
- Icichthys lockingtoni
- Psenopsis anomala
- Psenopsis cyanea
- Schedophilus maculatus
- Schedophilus medusophagus
- Schedophilus ovalis
- Schedophilus velaini
- Seriolella brama
- Seriolella caerulea
- Seriolella porosa
- Seriolella punctata
- Chiasmodon niger
- Dysalotus alcocki
- Kali indica
- Kali kerberti
- Kali macrura
- Diplospinus multistriatus
- Gempylus serpens
- Lepidocybium flavobrunneum
- Nealotus tripes
- Neoepinnula americana
- Neoepinnula orientalis
- Nesiarchus nasutus
- Paradiplospinus antarcticus
- Promethichthys prometheus
- Rexea antefurcata
- Rexea prometheoides
- Rexea solandri
- Ruvettus pretiosus
- Thyrsites atun
- Icosteus aenigmaticus
- Cubiceps baxteri
- Cubiceps capensis
- Cubiceps gracilis
- Cubiceps pauciradiatus
- Cubiceps whiteleggii
- Psenes arafurensis
- Psenes cyanophrys
- Psenes maculatus
- Psenes pellucidus
- Pomatomus saltatrix
- Acanthocybium solandri
- Allothunnus fallai
- Auxis rochei rochei
- Auxis thazard thazard
- Cybiosarda elegans
- Euthynnus affinis
- Euthynnus alletteratus
- Euthynnus lineatus
- Gasterochisma melampus
- Grammatorcynus bicarinatus
- Grammatorcynus bilineatus
- Gymnosarda unicolor
- Katsuwonus pelamis
- Rastrelliger brachysoma
- Rastrelliger faughni
- Rastrelliger kanagurta
- Sarda australis
- Sarda chiliensis chiliensis
- Sarda orientalis
- Sarda sarda
- Scomber australasicus
- Scomber colias
- Scomber japonicus
- Scomber scombrus
- Scomberomorus brasiliensis
- Scomberomorus cavalla
- Scomberomorus commerson
- Scomberomorus concolor
- Scomberomorus guttatus
- Scomberomorus koreanus
- Scomberomorus maculatus
- Scomberomorus munroi
- Scomberomorus niphonius
- Scomberomorus plurilineatus
- Scomberomorus queenslandicus
- Scomberomorus regalis
- Scomberomorus sierra
- Scomberomorus sinensis
- Scomberomorus tritor
- Thunnus alalunga
- Thunnus albacares
- Thunnus atlanticus
- Thunnus maccoyii
- Thunnus obesus
- Thunnus orientalis
- Thunnus thynnus
- Thunnus tonggol
- Scombrops boops
- Scombrops gilberti
- Pampus argenteus
- Pampus chinensis
- Pampus echinogaster
- Pampus minor
- Pampus punctatissimus
- Peprilus burti
- Peprilus paru
- Peprilus simillimus
- Stromateus brasiliensis
- Stromateus fiatola
- Stromateus stellatus
- Tetragonurus atlanticus
- Tetragonurus cuvieri
- Aphanopus arigato
- Aphanopus carbo
- Aphanopus intermedius
- Assurger anzac
- Benthodesmus elongatus
- Benthodesmus simonyi
- Evoxymetopon poeyi
- Evoxymetopon taeniatus
- Lepidopus altifrons
- Lepidopus caudatus
- Lepturacanthus roelandti
- Lepturacanthus savala
- Trichiurus brevis
- Trichiurus lepturus
- Trichiurus russelli
- Amarsipus carlsbergi
- Ariomma brevimanum
- Ariomma dollfusi
- Ariomma luridum
- Ariomma parini
- Ariomma regulus
- Arripis truttacea
- Arripis xylabion
- Brama caribbea
- Brama dussumieri
- Brama myersi
- Brama orcini
- Brama pauciradiata
- Eumegistus brevorti
- Eumegistus illustris
- Pteraclis aesticola
- Pteraclis carolinus
- Pteraclis velifera
- Caristius fasciatus
- Caristius japonicus
- Caristius macropus
- Neocaristius heemstrai
- Paracaristius aquilus
- Paracaristius maderensis
- Paracaristius nemorosus
- Paracaristius nudarcus
- Platyberyx opalescens
- Hyperoglyphe bythites
- Hyperoglyphe macrophthalma
- Hyperoglyphe pringlei
- Psenopsis humerosa
- Psenopsis intermedia
- Psenopsis obscura
- Psenopsis shojimai
- Schedophilus griseolineatus
- Schedophilus haedrichi
- Schedophilus huttoni
- Schedophilus pemarco
- Seriolella tinro
- Seriolella violacea
- Tubbia stewarti
- Tubbia tasmanica
- Chiasmodon asper
- Chiasmodon braueri
- Chiasmodon harteli
- Chiasmodon microcephalus
- Chiasmodon pluriradiatus
- Chiasmodon subniger
- Dysalotus oligoscolus
- Kali colubrina
- Kali falx
- Kali macrodon
- Kali parri
- Pseudoscopelus altipinnis
- Pseudoscopelus aphos
- Pseudoscopelus astronesthidens
- Pseudoscopelus australis
- Pseudoscopelus bothrorrhinos
- Pseudoscopelus cephalus
- Pseudoscopelus cordilluminatus
- Pseudoscopelus lavenbergi
- Pseudoscopelus obtusifrons
- Pseudoscopelus odontoglossum
- Pseudoscopelus parini
- Pseudoscopelus paxtoni
- Pseudoscopelus pierbartus
- Pseudoscopelus sagamianus
- Pseudoscopelus scriptus
- Pseudoscopelus scutatus
- Epinnula magistralis
- Paradiplospinus gracilis
- Rexea alisae
- Rexea bengalensis
- Rexea brevilineata
- Rexea nakamurai
- Rexichthys johnpaxtoni
- Thyrsitoides marleyi
- Thyrsitops lepidopoides
- Tongaichthys robustus
- Cubiceps caeruleus
- Cubiceps kotlyari
- Cubiceps macrolepis
- Cubiceps nanus
- Cubiceps paradoxus
- Nomeus gronovii
- Psenes sio
- Auxis rochei eudorax
- Auxis thazard brachydorax
- Orcynopsis unicolor
- Sarda chiliensis lineolata
- Scomberomorus lineolatus
- Scomberomorus multiradiatus
- Scomberomorus semifasciatus
- Scombrolabrax heterolepis
- Scombrops oculatus
- Peprilus medius
- Peprilus ovatus
- Peprilus snyderi
- Peprilus triacanthus
- Tetragonurus pacificus
- Aphanopus beckeri
- Aphanopus capricornis
- Aphanopus microphthalmus
- Aphanopus mikhailini
- Benthodesmus macrophthalmus
- Benthodesmus neglectus
- Benthodesmus oligoradiatus
- Benthodesmus pacificus
- Benthodesmus papua
- Benthodesmus suluensis
- Benthodesmus tenuis
- Benthodesmus tuckeri
- Benthodesmus vityazi
- Demissolinea novaeguineensis
- Eupleurogrammus glossodon
- Eupleurogrammus muticus
- Evoxymetopon macrophthalmus
- Lepidopus calcar
- Lepidopus dubius
- Lepidopus fitchi
- Lepidopus manis
- Lepturacanthus pantului
- Tentoriceps cristatus
- Trichiurus auriga
- Trichiurus australis
- Trichiurus gangeticus
- Trichiurus margarites
- Trichiurus nanhaiensis
- Trichiurus nickolensis
Gene coverage
Share of the 138 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| coi | 123 | 89% |
| cytb | 82 | 59% |
| 16s | 78 | 57% |
| 4c4 | 45 | 33% |
| nd2 | 42 | 30% |
| rhodopsin | 42 | 30% |
| 12s | 39 | 28% |
| plagl2 | 34 | 25% |
| zic1 | 34 | 25% |
| ptr | 30 | 22% |
| tbr1 | 29 | 21% |
| kiaa1239 | 28 | 20% |
| sh3px3 | 26 | 19% |
| panx2 | 25 | 18% |
| ripk4 | 24 | 17% |
| sidkey | 23 | 17% |
| myh6 | 22 | 16% |
| rag1 | 20 | 14% |
| rag2 | 17 | 12% |
| vcpip | 14 | 10% |
| enc1 | 13 | 9% |
| glyt | 12 | 9% |
| sreb2 | 11 | 8% |
| ficd | 10 | 7% |
| hoxc6a | 10 | 7% |
| svep1 | 8 | 6% |
| nd4 | 7 | 5% |
Enclosed taxa
Fossil calibrations
- Total group Trichuroidea (Argestichthys vysotzkyi†) 54.17 Ma
- Crown Scombridae (Eocoelopoma portentosum†) 54.17 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Scombriformes data (JSON format)
Species list for Scombriformes (CSV format)
Phylogenies
There were 6663 species that caused Scombriformes to be inferred as paraphyletic.
Time-calibrated phylogeny of only species in Scombriformes
Time-calibrated phylogeny of "Scombriformes"
Sequence data
Phylip sequences for Scombriformes
Nexus file for Scombriformes (includes character partitions and phylogeny)