Incertae sedis in Carangaria
55 of 105 species (52%) have genetic data.
Contents
| Taxon | Rank | Sampled / total | Sampling | Mean λDR |
|---|---|---|---|---|
| Polynemidae | Family | 13 / 43 | 0.07 | |
| Sphyraenidae | Family | 20 / 27 | 0.04 | |
| Centropomidae* | Family | 17 / 25 | 0.06 | |
| Toxotidae | Family | 2 / 7 | 0.06 | |
| Lactariidae | Family | 1 / 1 | 0.02 | |
| Leptobramidae | Family | 1 / 1 | 0.02 | |
| Menidae | Family | 1 / 1 | 0.02 |
Taxa marked with * were not recovered as monophyletic in our phylogenetic analysis.
Species
Largest genera
Sampled species out of the total in each genus:
- Sphyraena 20/27
- Polydactylus 7/21
- Centropomus 12/12
- Lates 4/11
- Polynemus 1/9
Familiar species
Well-known and model species in Incertae sedis in Carangaria. Species with genetic data are in bold.
- Lates calcarifer (barramundi)
All species
Species with genetic data are in bold.
Species list
- Centropomus armatus
- Centropomus ensiferus
- Centropomus medius
- Centropomus mexicanus
- Centropomus nigrescens
- Centropomus parallelus
- Centropomus pectinatus
- Centropomus poeyi
- Centropomus robalito
- Centropomus undecimalis
- Centropomus unionensis
- Centropomus viridis
- Lates calcarifer
- Lates japonicus
- Lates microlepis
- Lates niloticus
- Psammoperca waigiensis
- Lactarius lactarius
- Leptobrama muelleri
- Mene maculata
- Eleutheronema rhadinum
- Eleutheronema tetradactylum
- Filimanus heptadactyla
- Leptomelanosoma indicum
- Pentanemus quinquarius
- Polydactylus approximans
- Polydactylus macrochir
- Polydactylus malagasyensis
- Polydactylus octonemus
- Polydactylus plebeius
- Polydactylus sextarius
- Polydactylus virginicus
- Polynemus paradiseus
- Sphyraena acutipinnis
- Sphyraena argentea
- Sphyraena barracuda
- Sphyraena borealis
- Sphyraena chrysotaenia
- Sphyraena ensis
- Sphyraena flavicauda
- Sphyraena forsteri
- Sphyraena guachancho
- Sphyraena helleri
- Sphyraena iburiensis
- Sphyraena idiastes
- Sphyraena japonica
- Sphyraena jello
- Sphyraena obtusata
- Sphyraena picudilla
- Sphyraena pinguis
- Sphyraena putnamae
- Sphyraena sphyraena
- Sphyraena viridensis
- Toxotes chatareus
- Toxotes jaculatrix
- Hypopterus macropterus
- Lates angustifrons
- Lates lakdiva
- Lates longispinis
- Lates macrophthalmus
- Lates mariae
- Lates stappersii
- Lates uwisara
- Eleutheronema tridactylum
- Filimanus hexanema
- Filimanus perplexa
- Filimanus sealei
- Filimanus similis
- Filimanus xanthonema
- Galeoides decadactylus
- Parapolynemus verekeri
- Polydactylus bifurcus
- Polydactylus longipes
- Polydactylus luparensis
- Polydactylus macrophthalmus
- Polydactylus microstomus
- Polydactylus mullani
- Polydactylus multiradiatus
- Polydactylus nigripinnis
- Polydactylus oligodon
- Polydactylus opercularis
- Polydactylus persicus
- Polydactylus quadrifilis
- Polydactylus sexfilis
- Polydactylus siamensis
- Polynemus aquilonaris
- Polynemus bidentatus
- Polynemus dubius
- Polynemus hornadayi
- Polynemus kapuasensis
- Polynemus melanochir dulcis
- Polynemus melanochir melanochir
- Polynemus multifilis
- Sphyraena afra
- Sphyraena intermedia
- Sphyraena lucasana
- Sphyraena novaehollandiae
- Sphyraena qenie
- Sphyraena tome
- Sphyraena waitii
- Toxotes blythii
- Toxotes kimberleyensis
- Toxotes lorentzi
- Toxotes microlepis
- Toxotes oligolepis
Gene coverage
Share of the 55 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| coi | 31 | 56% |
| 16s | 29 | 53% |
| cytb | 26 | 47% |
| rag1 | 22 | 40% |
| zic1 | 16 | 29% |
| myh6 | 15 | 27% |
| plagl2 | 15 | 27% |
| rhodopsin | 14 | 25% |
| kiaa1239 | 13 | 24% |
| ripk4 | 12 | 22% |
| sreb2 | 12 | 22% |
| ptr | 11 | 20% |
| sh3px3 | 11 | 20% |
| 12s | 10 | 18% |
| ficd | 10 | 18% |
| tbr1 | 10 | 18% |
| glyt | 6 | 11% |
| 4c4 | 5 | 9% |
| hoxc6a | 5 | 9% |
| panx2 | 5 | 9% |
| vcpip | 5 | 9% |
| svep1 | 4 | 7% |
| enc1 | 3 | 5% |
| rag2 | 2 | 4% |
| nd2 | 1 | 2% |
| sidkey | 1 | 2% |
| nd4 | 0 | 0% |
Enclosed taxa
Fossil calibrations
- Total group Latidae (Eolates gracilis†) 49 Ma
- Total group Sphyraenidae (Sphyraena bolcensis†) 49 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Incertae sedis in Carangaria data (JSON format)
Species list for Incertae sedis in Carangaria (CSV format)
Phylogenies
There were 360 species that caused Incertae sedis in Carangaria to be inferred as paraphyletic.
Time-calibrated phylogeny of only species in Incertae sedis in Carangaria
Time-calibrated phylogeny of "Incertae sedis in Carangaria"
Sequence data
Phylip sequences for Incertae sedis in Carangaria
Nexus file for Incertae sedis in Carangaria (includes character partitions and phylogeny)