Clupeiformes
161 of 396 species (41%) have genetic data.
Contents
| Taxon | Rank | Sampled / total | Sampling | Mean λDR |
|---|---|---|---|---|
| Clupeoidei | Suborder | 160 / 395 | 0.13 | |
| Denticipitoidei | Suborder | 1 / 1 | 0.01 |
Species
Largest genera
Sampled species out of the total in each genus:
- Anchoa 18/35
- Alosa 13/26
- Thryssa 7/24
- Sardinella 14/21
- Stolephorus 0/20
Familiar species
Well-known and model species in Clupeiformes. Species with genetic data are in bold.
- Clupea harengus (Atlantic herring)
All species
Species with genetic data are in bold.
Species list
- Chirocentrus dorab
- Chirocentrus sp
- Alosa aestivalis
- Alosa agone
- Alosa alabamae
- Alosa alosa
- Alosa caspia caspia
- Alosa chrysochloris
- Alosa fallax
- Alosa immaculata
- Alosa killarnensis
- Alosa macedonica
- Alosa mediocris
- Alosa pseudoharengus
- Alosa sapidissima
- Amblygaster clupeoides
- Anodontostoma chacunda
- Brevoortia aurea
- Brevoortia patronus
- Brevoortia smithi
- Brevoortia tyrannus
- Clupanodon thrissa
- Clupea harengus
- Clupea pallasii pallasii
- Dorosoma anale
- Dorosoma cepedianum
- Dorosoma petenense
- Ethmalosa fimbriata
- Gilchristella aestuaria
- Harengula clupeola
- Harengula humeralis
- Harengula jaguana
- Harengula thrissina
- Herklotsichthys quadrimaculatus
- Herklotsichthys spilurus
- Hilsa kelee
- Hyperlophus vittatus
- Jenkinsia lamprotaenia
- Konosirus punctatus
- Limnothrissa miodon
- Microthrissa congica
- Microthrissa royauxi
- Nematalosa erebi
- Nematalosa japonica
- Nematalosa nasus
- Odaxothrissa vittata
- Opisthonema libertate
- Opisthonema medirastre
- Opisthonema oglinum
- Pellonula leonensis
- Pellonula vorax
- Platanichthys platana
- Potamothrissa obtusirostris
- Rhinosardinia amazonica
- Sardina pilchardus
- Sardinella albella
- Sardinella aurita
- Sardinella brasiliensis
- Sardinella fimbriata
- Sardinella gibbosa
- Sardinella hualiensis
- Sardinella jussieu
- Sardinella lemuru
- Sardinella longiceps
- Sardinella maderensis
- Sardinella melanura
- Sardinella sindensis
- Sardinella tawilis
- Sardinella zunasi
- Sardinops sagax
- Sauvagella madagascariensis
- Sauvagella robusta
- Sierrathrissa leonensis
- Spratelloides delicatulus
- Spratelloides gracilis
- Spratelloides robustus
- Sprattus sprattus
- Stolothrissa tanganicae
- Tenualosa ilisha
- Tenualosa macrura
- Tenualosa toli
- Dussumieria acuta
- Dussumieria elopsoides
- Etrumeus acuminatus
- Etrumeus makiawa
- Etrumeus micropus
- Etrumeus sadina
- Etrumeus whiteheadi
- Amazonsprattus scintilla
- Anchoa cayorum
- Anchoa chamensis
- Anchoa choerostoma
- Anchoa colonensis
- Anchoa compressa
- Anchoa cubana
- Anchoa delicatissima
- Anchoa filifera
- Anchoa hepsetus
- Anchoa lamprotaenia
- Anchoa lyolepis
- Anchoa mitchilli
- Anchoa mundeoloides
- Anchoa nasus
- Anchoa panamensis
- Anchoa parva
- Anchoa scofieldi
- Anchoa walkeri
- Anchovia macrolepidota
- Anchovia surinamensis
- Anchoviella alleni
- Anchoviella balboae
- Anchoviella brevirostris
- Anchoviella carrikeri
- Anchoviella elongata
- Anchoviella guianensis
- Anchoviella lepidentostole
- Cetengraulis edentulus
- Cetengraulis mysticetus
- Coilia brachygnathus
- Coilia dussumieri
- Coilia grayii
- Coilia lindmani
- Coilia mystus
- Coilia nasus
- Coilia ramcarati
- Coilia reynaldi
- Encrasicholina devisi
- Encrasicholina punctifer
- Engraulis anchoita
- Engraulis australis
- Engraulis encrasicolus
- Engraulis eurystole
- Engraulis japonicus
- Engraulis mordax
- Engraulis ringens
- Jurengraulis juruensis
- Lycengraulis batesii
- Lycengraulis grossidens
- Lycengraulis poeyi
- Lycothrissa crocodilus
- Pterengraulis atherinoides
- Setipinna phasa
- Setipinna taty
- Setipinna tenuifilis
- Thryssa adelae
- Thryssa chefuensis
- Thryssa hamiltonii
- Thryssa kammalensis
- Thryssa mystax
- Thryssa setirostris
- Thryssa vitrirostris
- Ilisha elongata
- Ilisha melastoma
- Ilisha striatula
- Odontognathus mucronatus
- Opisthopterus tardoore
- Pellona castelnaeana
- Pellona ditchela
- Pellona flavipinnis
- Pellona harroweri
- Denticeps clupeoides
- Chirocentrus nudus
- Alosa algeriensis
- Alosa braschnikowi
- Alosa caspia knipowitschi
- Alosa caspia persica
- Alosa curensis
- Alosa kessleri
- Alosa maeotica
- Alosa saposchnikowii
- Alosa sphaerocephala
- Alosa suworowi
- Alosa tanaica
- Alosa vistonica
- Alosa volgensis
- Amblygaster leiogaster
- Amblygaster sirm
- Anodontostoma selangkat
- Anodontostoma thailandiae
- Brevoortia gunteri
- Brevoortia pectinata
- Clupea bentincki
- Clupea manulensis
- Clupea pallasii marisalbi
- Clupea pallasii suworowi
- Clupeichthys aesarnensis
- Clupeichthys bleekeri
- Clupeichthys goniognathus
- Clupeichthys perakensis
- Clupeoides borneensis
- Clupeoides hypselosoma
- Clupeoides papuensis
- Clupeoides venulosus
- Clupeonella abrau abrau
- Clupeonella abrau muhlisi
- Clupeonella caspia
- Clupeonella cultriventris
- Clupeonella engrauliformis
- Clupeonella grimmi
- Clupeonella tscharchalensis
- Congothrissa gossei
- Corica laciniata
- Corica soborna
- Dayella malabarica
- Dorosoma chavesi
- Dorosoma smithi
- Ehirava fluviatilis
- Escualosa elongata
- Escualosa thoracata
- Ethmidium maculatum
- Gonialosa manmina
- Gonialosa modesta
- Gonialosa whiteheadi
- Gudusia chapra
- Gudusia variegata
- Herklotsichthys blackburni
- Herklotsichthys castelnaui
- Herklotsichthys collettei
- Herklotsichthys dispilonotus
- Herklotsichthys gotoi
- Herklotsichthys koningsbergeri
- Herklotsichthys lippa
- Herklotsichthys lossei
- Herklotsichthys ovalis
- Herklotsichthys punctatus
- Hyperlophus translucidus
- Jenkinsia majua
- Jenkinsia parvula
- Jenkinsia stolifera
- Laeviscutella dekimpei
- Lile gracilis
- Lile nigrofasciata
- Lile piquitinga
- Lile stolifera
- Microthrissa minuta
- Microthrissa moeruensis
- Microthrissa whiteheadi
- Minyclupeoides dentibranchialus
- Nannothrissa parva
- Nannothrissa stewarti
- Nematalosa arabica
- Nematalosa come
- Nematalosa flyensis
- Nematalosa galatheae
- Nematalosa papuensis
- Nematalosa persara
- Nematalosa resticularia
- Nematalosa vlaminghi
- Odaxothrissa ansorgii
- Odaxothrissa losera
- Odaxothrissa mento
- Opisthonema berlangai
- Opisthonema bulleri
- Poecilothrissa centralis
- Potamalosa richmondia
- Potamothrissa acutirostris
- Potamothrissa whiteheadi
- Ramnogaster arcuata
- Ramnogaster melanostoma
- Rhinosardinia bahiensis
- Sardinella atricauda
- Sardinella brachysoma
- Sardinella fijiense
- Sardinella marquesensis
- Sardinella neglecta
- Sardinella richardsoni
- Sardinella rouxi
- Spratelloides lewisi
- Spratellomorpha bianalis
- Sprattus antipodum
- Sprattus fuegensis
- Sprattus muelleri
- Sprattus novaehollandiae
- Sundasalanx malleti
- Sundasalanx megalops
- Sundasalanx mekongensis
- Sundasalanx mesops
- Sundasalanx microps
- Sundasalanx platyrhynchus
- Sundasalanx praecox
- Tenualosa reevesii
- Tenualosa thibaudeaui
- Thrattidion noctivagus
- Etrumeus golanii
- Etrumeus wongratanai
- Anchoa analis
- Anchoa argentivittata
- Anchoa belizensis
- Anchoa curta
- Anchoa eigenmannia
- Anchoa exigua
- Anchoa helleri
- Anchoa ischana
- Anchoa januaria
- Anchoa lucida
- Anchoa marinii
- Anchoa mundeola
- Anchoa pectoralis
- Anchoa spinifer
- Anchoa starksi
- Anchoa tricolor
- Anchoa trinitatis
- Anchovia clupeoides
- Anchoviella blackburni
- Anchoviella cayennensis
- Anchoviella jamesi
- Anchoviella juruasanga
- Anchoviella manamensis
- Anchoviella nattereri
- Anchoviella perezi
- Anchoviella perfasciata
- Anchoviella vaillanti
- Coilia borneensis
- Coilia coomansi
- Coilia macrognathos
- Coilia neglecta
- Coilia rebentischii
- Encrasicholina heteroloba
- Encrasicholina oligobranchus
- Encrasicholina purpurea
- Engraulis albidus
- Engraulis capensis
- Lycengraulis limnichthys
- Papuengraulis micropinna
- Pseudosetipinna haizhouensis
- Setipinna breviceps
- Setipinna brevifilis
- Setipinna melanochir
- Setipinna paxtoni
- Setipinna wheeleri
- Stolephorus advenus
- Stolephorus andhraensis
- Stolephorus apiensis
- Stolephorus baganensis
- Stolephorus brachycephalus
- Stolephorus carpentariae
- Stolephorus chinensis
- Stolephorus commersonnii
- Stolephorus dubiosus
- Stolephorus holodon
- Stolephorus indicus
- Stolephorus insularis
- Stolephorus multibranchus
- Stolephorus nelsoni
- Stolephorus pacificus
- Stolephorus ronquilloi
- Stolephorus shantungensis
- Stolephorus teguhi
- Stolephorus tri
- Stolephorus waitei
- Thryssa aestuaria
- Thryssa baelama
- Thryssa brevicauda
- Thryssa dayi
- Thryssa dussumieri
- Thryssa encrasicholoides
- Thryssa gautamiensis
- Thryssa kammalensoides
- Thryssa malabarica
- Thryssa marasriae
- Thryssa polybranchialis
- Thryssa purava
- Thryssa rastrosa
- Thryssa scratchleyi
- Thryssa spinidens
- Thryssa stenosoma
- Thryssa whiteheadi
- Chirocentrodon bleekerianus
- Ilisha africana
- Ilisha amazonica
- Ilisha compressa
- Ilisha filigera
- Ilisha fuerthii
- Ilisha kampeni
- Ilisha lunula
- Ilisha macrogaster
- Ilisha megaloptera
- Ilisha novacula
- Ilisha obfuscata
- Ilisha pristigastroides
- Ilisha sirishai
- Neoopisthopterus cubanus
- Neoopisthopterus tropicus
- Odontognathus compressus
- Odontognathus panamensis
- Opisthopterus dovii
- Opisthopterus effulgens
- Opisthopterus equatorialis
- Opisthopterus macrops
- Opisthopterus valenciennesi
- Pellona altamazonica
- Pellona dayi
- Pliosteostoma lutipinnis
- Pristigaster cayana
- Pristigaster whiteheadi
- Raconda russeliana
Gene coverage
Share of the 161 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| cytb | 114 | 71% |
| coi | 93 | 58% |
| 16s | 82 | 51% |
| rag1 | 69 | 43% |
| rag2 | 69 | 43% |
| 12s | 61 | 38% |
| rhodopsin | 12 | 7% |
| myh6 | 7 | 4% |
| zic1 | 7 | 4% |
| glyt | 5 | 3% |
| plagl2 | 5 | 3% |
| sreb2 | 5 | 3% |
| ptr | 4 | 2% |
| sh3px3 | 4 | 2% |
| enc1 | 2 | 1% |
| panx2 | 2 | 1% |
| tbr1 | 1 | 1% |
| 4c4 | 0 | 0% |
| ficd | 0 | 0% |
| hoxc6a | 0 | 0% |
| kiaa1239 | 0 | 0% |
| nd2 | 0 | 0% |
| nd4 | 0 | 0% |
| ripk4 | 0 | 0% |
| sidkey | 0 | 0% |
| svep1 | 0 | 0% |
| vcpip | 0 | 0% |
Enclosed taxa
2 suborders, 6 families
Fossil calibrations
- Total group Spratteloidini (Trollichthys bolcensis†) 49 Ma
- Crown Engraulidae (Eoengraulis fasoloi†) 49 Ma
- Crown Dorosoma (Dorosoma petenense†) 1.8 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Clupeiformes data (JSON format)
Species list for Clupeiformes (CSV format)
Phylogenies
Sequence data
Phylip sequences for Clupeiformes
Nexus file for Clupeiformes (includes character partitions and phylogeny)