Clupeidae
79 of 200 species (40%) have genetic data.
Species
Largest genera
Sampled species out of the total in each genus:
- Alosa 13/26
- Sardinella 14/21
- Herklotsichthys 2/12
- Nematalosa 3/11
- Clupeonella 0/7
Familiar species
Well-known and model species in Clupeidae. Species with genetic data are in bold.
- Clupea harengus (Atlantic herring)
All species
Species with genetic data are in bold.
Species list
- Alosa aestivalis
- Alosa agone
- Alosa alabamae
- Alosa alosa
- Alosa caspia caspia
- Alosa chrysochloris
- Alosa fallax
- Alosa immaculata
- Alosa killarnensis
- Alosa macedonica
- Alosa mediocris
- Alosa pseudoharengus
- Alosa sapidissima
- Amblygaster clupeoides
- Anodontostoma chacunda
- Brevoortia aurea
- Brevoortia patronus
- Brevoortia smithi
- Brevoortia tyrannus
- Clupanodon thrissa
- Clupea harengus
- Clupea pallasii pallasii
- Dorosoma anale
- Dorosoma cepedianum
- Dorosoma petenense
- Ethmalosa fimbriata
- Gilchristella aestuaria
- Harengula clupeola
- Harengula humeralis
- Harengula jaguana
- Harengula thrissina
- Herklotsichthys quadrimaculatus
- Herklotsichthys spilurus
- Hilsa kelee
- Hyperlophus vittatus
- Jenkinsia lamprotaenia
- Konosirus punctatus
- Limnothrissa miodon
- Microthrissa congica
- Microthrissa royauxi
- Nematalosa erebi
- Nematalosa japonica
- Nematalosa nasus
- Odaxothrissa vittata
- Opisthonema libertate
- Opisthonema medirastre
- Opisthonema oglinum
- Pellonula leonensis
- Pellonula vorax
- Platanichthys platana
- Potamothrissa obtusirostris
- Rhinosardinia amazonica
- Sardina pilchardus
- Sardinella albella
- Sardinella aurita
- Sardinella brasiliensis
- Sardinella fimbriata
- Sardinella gibbosa
- Sardinella hualiensis
- Sardinella jussieu
- Sardinella lemuru
- Sardinella longiceps
- Sardinella maderensis
- Sardinella melanura
- Sardinella sindensis
- Sardinella tawilis
- Sardinella zunasi
- Sardinops sagax
- Sauvagella madagascariensis
- Sauvagella robusta
- Sierrathrissa leonensis
- Spratelloides delicatulus
- Spratelloides gracilis
- Spratelloides robustus
- Sprattus sprattus
- Stolothrissa tanganicae
- Tenualosa ilisha
- Tenualosa macrura
- Tenualosa toli
- Alosa algeriensis
- Alosa braschnikowi
- Alosa caspia knipowitschi
- Alosa caspia persica
- Alosa curensis
- Alosa kessleri
- Alosa maeotica
- Alosa saposchnikowii
- Alosa sphaerocephala
- Alosa suworowi
- Alosa tanaica
- Alosa vistonica
- Alosa volgensis
- Amblygaster leiogaster
- Amblygaster sirm
- Anodontostoma selangkat
- Anodontostoma thailandiae
- Brevoortia gunteri
- Brevoortia pectinata
- Clupea bentincki
- Clupea manulensis
- Clupea pallasii marisalbi
- Clupea pallasii suworowi
- Clupeichthys aesarnensis
- Clupeichthys bleekeri
- Clupeichthys goniognathus
- Clupeichthys perakensis
- Clupeoides borneensis
- Clupeoides hypselosoma
- Clupeoides papuensis
- Clupeoides venulosus
- Clupeonella abrau abrau
- Clupeonella abrau muhlisi
- Clupeonella caspia
- Clupeonella cultriventris
- Clupeonella engrauliformis
- Clupeonella grimmi
- Clupeonella tscharchalensis
- Congothrissa gossei
- Corica laciniata
- Corica soborna
- Dayella malabarica
- Dorosoma chavesi
- Dorosoma smithi
- Ehirava fluviatilis
- Escualosa elongata
- Escualosa thoracata
- Ethmidium maculatum
- Gonialosa manmina
- Gonialosa modesta
- Gonialosa whiteheadi
- Gudusia chapra
- Gudusia variegata
- Herklotsichthys blackburni
- Herklotsichthys castelnaui
- Herklotsichthys collettei
- Herklotsichthys dispilonotus
- Herklotsichthys gotoi
- Herklotsichthys koningsbergeri
- Herklotsichthys lippa
- Herklotsichthys lossei
- Herklotsichthys ovalis
- Herklotsichthys punctatus
- Hyperlophus translucidus
- Jenkinsia majua
- Jenkinsia parvula
- Jenkinsia stolifera
- Laeviscutella dekimpei
- Lile gracilis
- Lile nigrofasciata
- Lile piquitinga
- Lile stolifera
- Microthrissa minuta
- Microthrissa moeruensis
- Microthrissa whiteheadi
- Minyclupeoides dentibranchialus
- Nannothrissa parva
- Nannothrissa stewarti
- Nematalosa arabica
- Nematalosa come
- Nematalosa flyensis
- Nematalosa galatheae
- Nematalosa papuensis
- Nematalosa persara
- Nematalosa resticularia
- Nematalosa vlaminghi
- Odaxothrissa ansorgii
- Odaxothrissa losera
- Odaxothrissa mento
- Opisthonema berlangai
- Opisthonema bulleri
- Poecilothrissa centralis
- Potamalosa richmondia
- Potamothrissa acutirostris
- Potamothrissa whiteheadi
- Ramnogaster arcuata
- Ramnogaster melanostoma
- Rhinosardinia bahiensis
- Sardinella atricauda
- Sardinella brachysoma
- Sardinella fijiense
- Sardinella marquesensis
- Sardinella neglecta
- Sardinella richardsoni
- Sardinella rouxi
- Spratelloides lewisi
- Spratellomorpha bianalis
- Sprattus antipodum
- Sprattus fuegensis
- Sprattus muelleri
- Sprattus novaehollandiae
- Sundasalanx malleti
- Sundasalanx megalops
- Sundasalanx mekongensis
- Sundasalanx mesops
- Sundasalanx microps
- Sundasalanx platyrhynchus
- Sundasalanx praecox
- Tenualosa reevesii
- Tenualosa thibaudeaui
- Thrattidion noctivagus
Gene coverage
Share of the 79 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| cytb | 57 | 72% |
| 16s | 52 | 66% |
| coi | 52 | 66% |
| 12s | 37 | 47% |
| rag2 | 18 | 23% |
| rag1 | 16 | 20% |
| rhodopsin | 8 | 10% |
| zic1 | 3 | 4% |
| myh6 | 2 | 3% |
| sreb2 | 2 | 3% |
| glyt | 1 | 1% |
| panx2 | 1 | 1% |
| plagl2 | 1 | 1% |
| ptr | 1 | 1% |
| sh3px3 | 1 | 1% |
| 4c4 | 0 | 0% |
| enc1 | 0 | 0% |
| ficd | 0 | 0% |
| hoxc6a | 0 | 0% |
| kiaa1239 | 0 | 0% |
| nd2 | 0 | 0% |
| nd4 | 0 | 0% |
| ripk4 | 0 | 0% |
| sidkey | 0 | 0% |
| svep1 | 0 | 0% |
| tbr1 | 0 | 0% |
| vcpip | 0 | 0% |
Fossil calibrations
- Crown Dorosoma (Dorosoma petenense†) 1.8 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Clupeidae data (JSON format)
Species list for Clupeidae (CSV format)
Phylogenies
There were 81 species that caused Clupeidae to be inferred as paraphyletic.
Time-calibrated phylogeny of only species in Clupeidae
Time-calibrated phylogeny of "Clupeidae"
Sequence data
Phylip sequences for Clupeidae
Nexus file for Clupeidae (includes character partitions and phylogeny)