Trachichthyidae
14 of 51 species (27%) have genetic data.
Species
Largest genera
Sampled species out of the total in each genus:
- Hoplostethus 10/32
- Aulotrachichthys 2/8
- Optivus 0/3
- Paratrachichthys 1/3
- Gephyroberyx 1/2
All species
Species with genetic data are in bold.
Species list
- Aulotrachichthys prosthemius
- Aulotrachichthys sajademalensis
- Gephyroberyx darwinii
- Hoplostethus atlanticus
- Hoplostethus cadenati
- Hoplostethus crassispinus
- Hoplostethus gigas
- Hoplostethus japonicus
- Hoplostethus latus
- Hoplostethus mediterraneus mediterraneus
- Hoplostethus melanopus
- Hoplostethus occidentalis
- Hoplostethus ravurictus
- Paratrachichthys macleayi
- Aulotrachichthys argyrophanus
- Aulotrachichthys atlanticus
- Aulotrachichthys heptalepis
- Aulotrachichthys latus
- Aulotrachichthys novaezelandicus
- Aulotrachichthys pulsator
- Gephyroberyx japonicus
- Hoplostethus abramovi
- Hoplostethus confinis
- Hoplostethus druzhinini
- Hoplostethus fedorovi
- Hoplostethus fragilis
- Hoplostethus grandperrini
- Hoplostethus intermedius
- Hoplostethus marisrubri
- Hoplostethus mediterraneus sonodae
- Hoplostethus mediterraneus trunovi
- Hoplostethus melanopeza
- Hoplostethus melanopterus
- Hoplostethus mento
- Hoplostethus metallicus
- Hoplostethus mikhailini
- Hoplostethus pacificus
- Hoplostethus rifti
- Hoplostethus robustispinus
- Hoplostethus rubellopterus
- Hoplostethus shubnikovi
- Hoplostethus tenebricus
- Hoplostethus vniro
- Optivus agastos
- Optivus agrammus
- Optivus elongatus
- Paratrachichthys fernandezianus
- Paratrachichthys trailli
- Parinoberyx horridus
- Sorosichthys ananassa
- Trachichthys australis
Gene coverage
Share of the 14 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| cytb | 8 | 57% |
| coi | 7 | 50% |
| 16s | 4 | 29% |
| rag1 | 4 | 29% |
| sh3px3 | 4 | 29% |
| tbr1 | 4 | 29% |
| zic1 | 4 | 29% |
| glyt | 3 | 21% |
| myh6 | 3 | 21% |
| plagl2 | 3 | 21% |
| ptr | 3 | 21% |
| sreb2 | 3 | 21% |
| rhodopsin | 2 | 14% |
| ripk4 | 2 | 14% |
| sidkey | 2 | 14% |
| 12s | 1 | 7% |
| 4c4 | 1 | 7% |
| enc1 | 1 | 7% |
| ficd | 1 | 7% |
| kiaa1239 | 1 | 7% |
| panx2 | 1 | 7% |
| svep1 | 1 | 7% |
| hoxc6a | 0 | 0% |
| nd2 | 0 | 0% |
| nd4 | 0 | 0% |
| rag2 | 0 | 0% |
| vcpip | 0 | 0% |
Fossil calibrations
- Total group Gephyroberyx (Gephyroberyx robustus†) 32.02 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Trachichthyidae data (JSON format)
Species list for Trachichthyidae (CSV format)
Phylogenies
There were 4 species that caused Trachichthyidae to be inferred as paraphyletic.
Time-calibrated phylogeny of only species in Trachichthyidae
Time-calibrated phylogeny of "Trachichthyidae"
Sequence data
Phylip sequences for Trachichthyidae
Nexus file for Trachichthyidae (includes character partitions and phylogeny)