Salmoniformes
88 of 222 species (40%) have genetic data.
Contents
| Taxon | Rank | Sampled / total | Sampling | Mean λDR |
|---|---|---|---|---|
| Salmonidae | Family | 88 / 222 | 0.85 |
Species
Largest genera
Sampled species out of the total in each genus:
- Coregonus 25/79
- Salvelinus 19/54
- Salmo 9/41
- Oncorhynchus 13/17
- Thymallus 7/14
Familiar species
Well-known and model species in Salmoniformes. Species with genetic data are in bold.
- Oncorhynchus mykiss (rainbow trout)
- Salmo salar (Atlantic salmon)
All species
Species with genetic data are in bold.
Species list
- Brachymystax lenok
- Brachymystax savinovi
- Brachymystax tumensis
- Coregonus albula
- Coregonus autumnalis
- Coregonus baerii
- Coregonus baicalensis
- Coregonus baunti
- Coregonus chadary
- Coregonus clupeaformis
- Coregonus hoyi
- Coregonus huntsmani
- Coregonus kiyi
- Coregonus laurettae
- Coregonus lavaretus
- Coregonus migratorius
- Coregonus muksun
- Coregonus nasus
- Coregonus nigripinnis
- Coregonus oxyrinchus
- Coregonus peled
- Coregonus pidschian
- Coregonus pollan
- Coregonus pravdinellus
- Coregonus sardinella
- Coregonus tugun tugun
- Coregonus ussuriensis
- Coregonus zenithicus
- Hucho bleekeri
- Hucho hucho
- Hucho perryi
- Hucho taimen
- Oncorhynchus apache
- Oncorhynchus chrysogaster
- Oncorhynchus clarkii
- Oncorhynchus gilae
- Oncorhynchus gorbuscha
- Oncorhynchus keta
- Oncorhynchus kisutch
- Oncorhynchus masou formosanus
- Oncorhynchus masou masou
- Oncorhynchus mykiss
- Oncorhynchus nerka
- Oncorhynchus rhodurus
- Oncorhynchus tshawytscha
- Prosopium abyssicola
- Prosopium coulterii
- Prosopium cylindraceum
- Prosopium gemmifer
- Prosopium spilonotus
- Prosopium williamsoni
- Salmo carpio
- Salmo labrax
- Salmo macrostigma
- Salmo marmoratus
- Salmo obtusirostris
- Salmo ohridanus
- Salmo platycephalus
- Salmo salar
- Salmo trutta
- Salvelinus albus
- Salvelinus alpinus alpinus
- Salvelinus boganidae
- Salvelinus confluentus
- Salvelinus curilus
- Salvelinus drjagini
- Salvelinus elgyticus
- Salvelinus fontinalis
- Salvelinus kronocius
- Salvelinus kuznetzovi
- Salvelinus leucomaenis imbrius
- Salvelinus leucomaenis leucomaenis
- Salvelinus leucomaenis pluvius
- Salvelinus levanidovi
- Salvelinus malma
- Salvelinus namaycush
- Salvelinus neiva
- Salvelinus schmidti
- Salvelinus taranetzi
- Salvethymus svetovidovi
- Stenodus leucichthys
- Thymallus arcticus
- Thymallus baicalensis
- Thymallus brevirostris
- Thymallus grubii flavomaculatus
- Thymallus grubii grubii
- Thymallus thymallus
- Thymallus tugarinae
- Coregonus albellus
- Coregonus alpenae
- Coregonus alpinus
- Coregonus anaulorum
- Coregonus arenicolus
- Coregonus artedi
- Coregonus atterensis
- Coregonus austriacus
- Coregonus bavaricus
- Coregonus bezola
- Coregonus candidus
- Coregonus clupeoides
- Coregonus confusus
- Coregonus danneri
- Coregonus duplex
- Coregonus fatioi
- Coregonus fera
- Coregonus fontanae
- Coregonus gutturosus
- Coregonus heglingus
- Coregonus hiemalis
- Coregonus hoferi
- Coregonus holsata
- Coregonus johannae
- Coregonus kiletz
- Coregonus ladogae
- Coregonus lucinensis
- Coregonus lutokka
- Coregonus macrophthalmus
- Coregonus maraena
- Coregonus maraenoides
- Coregonus maxillaris
- Coregonus megalops
- Coregonus nelsonii
- Coregonus nilssoni
- Coregonus nipigon
- Coregonus nobilis
- Coregonus palaea
- Coregonus pallasii
- Coregonus pennantii
- Coregonus reighardi
- Coregonus renke
- Coregonus restrictus
- Coregonus stigmaticus
- Coregonus subautumnalis
- Coregonus suidteri
- Coregonus trybomi
- Coregonus tugun lenensis
- Coregonus vandesius
- Coregonus vessicus
- Coregonus wartmanni
- Coregonus widegreni
- Coregonus zuerichensis
- Coregonus zugensis
- Hucho ishikawae
- Oncorhynchus aguabonita
- Oncorhynchus iwame
- Oncorhynchus kawamurae
- Oncorhynchus masou macrostomus
- Salmo abanticus
- Salmo akairos
- Salmo aphelios
- Salmo balcanicus
- Salmo caspius
- Salmo cenerinus
- Salmo cettii
- Salmo ciscaucasicus
- Salmo coruhensis
- Salmo dentex
- Salmo ezenami
- Salmo farioides
- Salmo ferox
- Salmo fibreni
- Salmo ischchan
- Salmo letnica
- Salmo lourosensis
- Salmo lumi
- Salmo macedonicus
- Salmo montenigrinus
- Salmo nigripinnis
- Salmo pallaryi
- Salmo pelagonicus
- Salmo peristericus
- Salmo rhodanensis
- Salmo rizeensis
- Salmo schiefermuelleri
- Salmo stomachicus
- Salmo taleri
- Salmo tigridis
- Salmo visovacensis
- Salmo zrmanjaensis
- Salvelinus agassizii
- Salvelinus alpinus erythrinus
- Salvelinus anaktuvukensis
- Salvelinus andriashevi
- Salvelinus colii
- Salvelinus czerskii
- Salvelinus evasus
- Salvelinus faroensis
- Salvelinus fimbriatus
- Salvelinus gracillimus
- Salvelinus grayi
- Salvelinus gritzenkoi
- Salvelinus inframundus
- Salvelinus jacuticus
- Salvelinus japonicus
- Salvelinus killinensis
- Salvelinus krogiusae
- Salvelinus lepechini
- Salvelinus lonsdalii
- Salvelinus mallochi
- Salvelinus maxillaris
- Salvelinus murta
- Salvelinus neocomensis
- Salvelinus obtusus
- Salvelinus perisii
- Salvelinus profundus
- Salvelinus salvelinoinsularis
- Salvelinus struanensis
- Salvelinus taimyricus
- Salvelinus thingvallensis
- Salvelinus tolmachoffi
- Salvelinus umbla
- Salvelinus vasiljevae
- Salvelinus willoughbii
- Salvelinus youngeri
- Stenodus nelma
- Thymallus brevipinnis
- Thymallus burejensis
- Thymallus mertensii
- Thymallus nigrescens
- Thymallus pallasii
- Thymallus svetovidovi
- Thymallus yaluensis
Gene coverage
Share of the 88 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| cytb | 83 | 94% |
| coi | 67 | 76% |
| 16s | 27 | 31% |
| rag1 | 27 | 31% |
| 12s | 22 | 25% |
| rhodopsin | 13 | 15% |
| myh6 | 10 | 11% |
| plagl2 | 9 | 10% |
| glyt | 8 | 9% |
| sh3px3 | 8 | 9% |
| tbr1 | 8 | 9% |
| zic1 | 8 | 9% |
| ptr | 7 | 8% |
| nd2 | 6 | 7% |
| nd4 | 6 | 7% |
| sreb2 | 6 | 7% |
| enc1 | 5 | 6% |
| hoxc6a | 1 | 1% |
| panx2 | 1 | 1% |
| rag2 | 1 | 1% |
| 4c4 | 0 | 0% |
| ficd | 0 | 0% |
| kiaa1239 | 0 | 0% |
| ripk4 | 0 | 0% |
| sidkey | 0 | 0% |
| svep1 | 0 | 0% |
| vcpip | 0 | 0% |
Enclosed taxa
1 family
- Family
- Salmonidae
Fossil calibrations
- Total group Salmoninae (Eosalmo driftwoodensis†) 51.43 Ma
- Total group Hucho (Hucho sp.†) 15.4 Ma
- Total group Oncorynchus (Oncorhynchus ('Smilodonichthys') rastrosus†) 8.2 Ma
- Oncorhynchus keta (Oncorhynchus keta†) 4.8 Ma
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Salmoniformes data (JSON format)
Species list for Salmoniformes (CSV format)
Phylogenies
Sequence data
Phylip sequences for Salmoniformes
Nexus file for Salmoniformes (includes character partitions and phylogeny)