Pomacentridae
223 of 387 species (58%) have genetic data.
Species
Largest genera
Sampled species out of the total in each genus:
- Chromis 45/97
- Pomacentrus 34/71
- Stegastes 20/37
- Chrysiptera 19/33
- Amphiprion 24/29
Familiar species
Well-known and model species in Pomacentridae. Species with genetic data are in bold.
- Amphiprion ocellaris (clown anemonefish)
All species
Species with genetic data are in bold.
Species list
- Abudefduf abdominalis
- Abudefduf bengalensis
- Abudefduf concolor
- Abudefduf declivifrons
- Abudefduf hoefleri
- Abudefduf lorenzi
- Abudefduf luridus
- Abudefduf margariteus
- Abudefduf notatus
- Abudefduf saxatilis
- Abudefduf septemfasciatus
- Abudefduf sexfasciatus
- Abudefduf sordidus
- Abudefduf sparoides
- Abudefduf taurus
- Abudefduf troschelii
- Abudefduf vaigiensis
- Abudefduf whitleyi
- Acanthochromis polyacanthus
- Altrichthys azurelineatus
- Altrichthys curatus
- Amblyglyphidodon aureus
- Amblyglyphidodon batunai
- Amblyglyphidodon curacao
- Amblyglyphidodon indicus
- Amblyglyphidodon leucogaster
- Amblyglyphidodon orbicularis
- Amblyglyphidodon ternatensis
- Amblypomacentrus clarus
- Amphiprion akallopisos
- Amphiprion akindynos
- Amphiprion allardi
- Amphiprion barberi
- Amphiprion bicinctus
- Amphiprion chagosensis
- Amphiprion chrysogaster
- Amphiprion chrysopterus
- Amphiprion clarkii
- Amphiprion ephippium
- Amphiprion frenatus
- Amphiprion latifasciatus
- Amphiprion leucokranos
- Amphiprion mccullochi
- Amphiprion melanopus
- Amphiprion nigripes
- Amphiprion ocellaris
- Amphiprion omanensis
- Amphiprion percula
- Amphiprion perideraion
- Amphiprion polymnus
- Amphiprion rubrocinctus
- Amphiprion sandaracinos
- Amphiprion sebae
- Azurina hirundo
- Cheiloprion labiatus
- Chromis abyssus
- Chromis acares
- Chromis agilis
- Chromis alpha
- Chromis alta
- Chromis amboinensis
- Chromis analis
- Chromis atrilobata
- Chromis atripectoralis
- Chromis atripes
- Chromis bami
- Chromis caudalis
- Chromis chromis
- Chromis chrysura
- Chromis circumaurea
- Chromis cyanea
- Chromis degruyi
- Chromis delta
- Chromis dimidiata
- Chromis earina
- Chromis enchrysura
- Chromis fieldi
- Chromis flavomaculata
- Chromis fumea
- Chromis insolata
- Chromis iomelas
- Chromis lepidolepis
- Chromis limbata
- Chromis margaritifer
- Chromis multilineata
- Chromis nigrura
- Chromis nitida
- Chromis notata
- Chromis opercularis
- Chromis ovatiformes
- Chromis punctipinnis
- Chromis retrofasciata
- Chromis ternatensis
- Chromis vanderbilti
- Chromis viridis
- Chromis weberi
- Chromis woodsi
- Chromis xanthochira
- Chromis xanthopterygia
- Chromis xanthura
- Chrysiptera annulata
- Chrysiptera biocellata
- Chrysiptera brownriggii
- Chrysiptera caeruleolineata
- Chrysiptera cyanea
- Chrysiptera glauca
- Chrysiptera hemicyanea
- Chrysiptera kuiteri
- Chrysiptera oxycephala
- Chrysiptera parasema
- Chrysiptera rex
- Chrysiptera rollandi
- Chrysiptera springeri
- Chrysiptera starcki
- Chrysiptera talboti
- Chrysiptera taupou
- Chrysiptera traceyi
- Chrysiptera tricincta
- Chrysiptera unimaculata
- Dascyllus albisella
- Dascyllus aruanus
- Dascyllus carneus
- Dascyllus flavicaudus
- Dascyllus marginatus
- Dascyllus melanurus
- Dascyllus reticulatus
- Dascyllus trimaculatus
- Dischistodus chrysopoecilus
- Dischistodus melanotus
- Dischistodus perspicillatus
- Dischistodus prosopotaenia
- Dischistodus pseudochrysopoecilus
- Hemiglyphidodon plagiometopon
- Hypsypops rubicundus
- Lepidozygus tapeinosoma
- Mecaenichthys immaculatus
- Microspathodon bairdii
- Microspathodon chrysurus
- Microspathodon dorsalis
- Neoglyphidodon carlsoni
- Neoglyphidodon melas
- Neoglyphidodon nigroris
- Neoglyphidodon oxyodon
- Neoglyphidodon polyacanthus
- Neoglyphidodon thoracotaeniatus
- Neopomacentrus azysron
- Neopomacentrus bankieri
- Neopomacentrus cyanomos
- Neopomacentrus filamentosus
- Neopomacentrus metallicus
- Neopomacentrus miryae
- Neopomacentrus nemurus
- Neopomacentrus sindensis
- Neopomacentrus taeniurus
- Parma microlepis
- Parma oligolepis
- Plectroglyphidodon dickii
- Plectroglyphidodon imparipennis
- Plectroglyphidodon johnstonianus
- Plectroglyphidodon lacrymatus
- Plectroglyphidodon leucozonus
- Plectroglyphidodon phoenixensis
- Plectroglyphidodon randalli
- Pomacentrus adelus
- Pomacentrus agassizii
- Pomacentrus albicaudatus
- Pomacentrus alexanderae
- Pomacentrus alleni
- Pomacentrus amboinensis
- Pomacentrus arabicus
- Pomacentrus auriventris
- Pomacentrus australis
- Pomacentrus baenschi
- Pomacentrus bankanensis
- Pomacentrus brachialis
- Pomacentrus burroughi
- Pomacentrus caeruleopunctatus
- Pomacentrus caeruleus
- Pomacentrus chrysurus
- Pomacentrus coelestis
- Pomacentrus grammorhynchus
- Pomacentrus imitator
- Pomacentrus lepidogenys
- Pomacentrus leptus
- Pomacentrus milleri
- Pomacentrus moluccensis
- Pomacentrus nagasakiensis
- Pomacentrus nigromanus
- Pomacentrus pavo
- Pomacentrus philippinus
- Pomacentrus reidi
- Pomacentrus smithi
- Pomacentrus spilotoceps
- Pomacentrus sulfureus
- Pomacentrus trichrourus
- Pomacentrus trilineatus
- Pomacentrus vaiuli
- Pomachromis fuscidorsalis
- Pomachromis richardsoni
- Premnas biaculeatus
- Pristotis obtusirostris
- Similiparma hermani
- Stegastes adustus
- Stegastes albifasciatus
- Stegastes altus
- Stegastes apicalis
- Stegastes diencaeus
- Stegastes fasciolatus
- Stegastes flavilatus
- Stegastes fuscus
- Stegastes gascoynei
- Stegastes imbricatus
- Stegastes leucostictus
- Stegastes limbatus
- Stegastes lividus
- Stegastes nigricans
- Stegastes obreptus
- Stegastes partitus
- Stegastes pelicieri
- Stegastes planifrons
- Stegastes rectifraenum
- Stegastes variabilis
- Teixeirichthys jordani
- Abudefduf conformis
- Abudefduf natalensis
- Amblyglyphidodon flavilatus
- Amblyglyphidodon flavopurpureus
- Amblyglyphidodon melanopterus
- Amblyglyphidodon silolona
- Amblypomacentrus breviceps
- Amblypomacentrus vietnamicus
- Amphiprion fuscocaudatus
- Amphiprion latezonatus
- Amphiprion pacificus
- Amphiprion thiellei
- Amphiprion tricinctus
- Azurina eupalama
- Chromis abrupta
- Chromis abyssicola
- Chromis albicauda
- Chromis albomaculata
- Chromis alleni
- Chromis athena
- Chromis axillaris
- Chromis brevirostris
- Chromis cadenati
- Chromis cinerascens
- Chromis crusma
- Chromis dasygenys
- Chromis dispilus
- Chromis durvillei
- Chromis elerae
- Chromis fatuhivae
- Chromis flavapicis
- Chromis flavaxilla
- Chromis flavicauda
- Chromis flavipectoralis
- Chromis hanui
- Chromis hypsilepis
- Chromis intercrusma
- Chromis jubauna
- Chromis klunzingeri
- Chromis leucura
- Chromis limbaughi
- Chromis lineata
- Chromis lubbocki
- Chromis meridiana
- Chromis mirationis
- Chromis monochroma
- Chromis nigroanalis
- Chromis okamurai
- Chromis onumai
- Chromis ovalis
- Chromis pamae
- Chromis pelloura
- Chromis pembae
- Chromis planesi
- Chromis pura
- Chromis randalli
- Chromis sanctaehelenae
- Chromis scotochiloptera
- Chromis scotti
- Chromis struhsakeri
- Chromis trialpha
- Chromis unipa
- Chromis verater
- Chromis westaustralis
- Chromis xouthos
- Chromis xutha
- Chrysiptera albata
- Chrysiptera arnazae
- Chrysiptera bleekeri
- Chrysiptera chrysocephala
- Chrysiptera cymatilis
- Chrysiptera flavipinnis
- Chrysiptera galba
- Chrysiptera giti
- Chrysiptera niger
- Chrysiptera notialis
- Chrysiptera pricei
- Chrysiptera rapanui
- Chrysiptera sheila
- Chrysiptera sinclairi
- Dascyllus auripinnis
- Dascyllus strasburgi
- Dischistodus darwiniensis
- Dischistodus fasciatus
- Microspathodon frontatus
- Neoglyphidodon bonang
- Neoglyphidodon crossi
- Neoglyphidodon mitratus
- Neopomacentrus anabatoides
- Neopomacentrus aquadulcis
- Neopomacentrus fallax
- Neopomacentrus fuliginosus
- Neopomacentrus sororius
- Neopomacentrus violascens
- Neopomacentrus xanthurus
- Nexilosus latifrons
- Parma alboscapularis
- Parma bicolor
- Parma kermadecensis
- Parma mccullochi
- Parma occidentalis
- Parma polylepis
- Parma unifasciata
- Parma victoriae
- Plectroglyphidodon flaviventris
- Plectroglyphidodon sagmarius
- Plectroglyphidodon sindonis
- Pomacentrus albimaculus
- Pomacentrus aquilus
- Pomacentrus armillatus
- Pomacentrus atriaxillaris
- Pomacentrus aurifrons
- Pomacentrus azuremaculatus
- Pomacentrus bintanensis
- Pomacentrus bipunctatus
- Pomacentrus callainus
- Pomacentrus cheraphilus
- Pomacentrus colini
- Pomacentrus cuneatus
- Pomacentrus emarginatus
- Pomacentrus fakfakensis
- Pomacentrus geminospilus
- Pomacentrus indicus
- Pomacentrus javanicus
- Pomacentrus komodoensis
- Pomacentrus limosus
- Pomacentrus littoralis
- Pomacentrus melanochir
- Pomacentrus microspilus
- Pomacentrus nigromarginatus
- Pomacentrus opisthostigma
- Pomacentrus pikei
- Pomacentrus polyspinus
- Pomacentrus proteus
- Pomacentrus rodriguesensis
- Pomacentrus saksonoi
- Pomacentrus similis
- Pomacentrus simsiang
- Pomacentrus stigma
- Pomacentrus taeniometopon
- Pomacentrus tripunctatus
- Pomacentrus wardi
- Pomacentrus xanthosternus
- Pomacentrus yoshii
- Pomachromis exilis
- Pomachromis guamensis
- Pristotis cyanostigma
- Stegastes acapulcoensis
- Stegastes arcifrons
- Stegastes aureus
- Stegastes baldwini
- Stegastes beebei
- Stegastes emeryi
- Stegastes insularis
- Stegastes leucorus
- Stegastes lubbocki
- Stegastes otophorus
- Stegastes pictus
- Stegastes punctatus
- Stegastes redemptus
- Stegastes rocasensis
- Stegastes sanctaehelenae
- Stegastes sanctipauli
- Stegastes uenfi
Gene coverage
Share of the 223 sampled species with data for each gene
| Gene | Species with data | % of sampled species |
|---|---|---|
| 16s | 181 | 81% |
| cytb | 162 | 73% |
| 12s | 150 | 67% |
| coi | 134 | 60% |
| rag1 | 101 | 45% |
| rag2 | 45 | 20% |
| zic1 | 42 | 19% |
| plagl2 | 38 | 17% |
| ptr | 33 | 15% |
| tbr1 | 33 | 15% |
| sh3px3 | 31 | 14% |
| myh6 | 28 | 13% |
| ripk4 | 26 | 12% |
| kiaa1239 | 25 | 11% |
| enc1 | 21 | 9% |
| glyt | 21 | 9% |
| ficd | 20 | 9% |
| sidkey | 20 | 9% |
| sreb2 | 20 | 9% |
| rhodopsin | 17 | 8% |
| vcpip | 17 | 8% |
| panx2 | 16 | 7% |
| svep1 | 15 | 7% |
| hoxc6a | 6 | 3% |
| 4c4 | 5 | 2% |
| nd2 | 1 | <1% |
| nd4 | 0 | 0% |
Fossil calibrations
No internal fossil calibrations are available for this group.
Downloads
These data are released under the CC0 1.0 public domain dedication; please cite us if you use them (License).
Download Pomacentridae data (JSON format)
Species list for Pomacentridae (CSV format)
Phylogenies
Sequence data
Phylip sequences for Pomacentridae
Nexus file for Pomacentridae (includes character partitions and phylogeny)