fishtree_complete_phylogeny, gets complete phylogenies where unsampled taxa were placed using stochastic polytomy resolution.
memoise instead of rolling our own caching functionality.
New global option
fishtree.quiet: when set to
FALSE, be more verbose during downloads (can help with debugging issues).
Some internal reorganization
fishtree_rogues, identifies rogue/intruder taxa that break the monophyly of a selected group.
fishtree_phylogeny now permits downloads of MRCA trees for paraphyletic groups. Suggested by an anonymous reviewer.
fishtree_taxonomy revamped. It now takes a single argument
ranks = ... where you can retrieve taxonomic information for any valid taxonomic rank in our taxonomy. Calling it without arguments returns a data frame of all valid taxa names. Suggested by an anonymous reviewer.