{
  "$schema": "https://fishtreeoflife.org/schema/manifest/v1.json",
  "schema_version": 1,
  "default_release": "R2018",
  "releases": [
    {
      "id": "R2018",
      "title": "Rabosky et al. 2018",
      "status": "stable",
      "citation": "Rabosky, D. L., Chang, J., Title, P. O., Cowman, P. F., Sallan, L., Friedman, M., Kaschner, K., Garilao, C., Near, T. J., Coll, M., Alfaro, M. E. (2018). An inverse latitudinal gradient in speciation rate for marine fishes. Nature, 559(7714), 392–395.",
      "doi": "10.1038/s41586-018-0273-1",
      "license": "CC0-1.0",
      "native_taxonomy": "PFC2018",
      "views": [
        {
          "taxonomy": "PFC2018",
          "legacy_api": "../api/taxonomy/"
        }
      ],
      "files": [
        {
          "role": "chronogram",
          "title": "Timetree",
          "url": "../downloads/actinopt_12k_treePL.tre.xz",
          "format": "newick",
          "bytes": 169948,
          "sha256": "543221541758e2bce063a5a76d6858f4f83a8a770225ee96c4292f7917188da2"
        },
        {
          "role": "phylogram",
          "title": "RAxML phylogram",
          "url": "../downloads/actinopt_12k_raxml.tre.xz",
          "format": "newick",
          "bytes": 310840,
          "sha256": "306f83016a3ba172a8f415549093400ef11b36bb718a5b9f23e264e140681686"
        },
        {
          "role": "support",
          "title": "RAxML tree with SH-like support values",
          "url": "../downloads/actinopt_12k_support.tre.xz",
          "format": "newick",
          "bytes": 313732,
          "sha256": "0e2a4d8649d9304b38614e8010702f7b52e21392cc19ea007f386c237e11a106"
        },
        {
          "role": "complete_trees",
          "title": "Complete \"all-taxon assembled\" chronograms",
          "url": "../downloads/actinopt_full.trees.xz",
          "format": "newick",
          "bytes": 34747684,
          "sha256": "1dce6587bb33f341dc68f6356c447679387fe5c2785515b64a3b2be955ccdafe",
          "taxonomy": "PFC2018",
          "count": 100
        },
        {
          "role": "tip_rates",
          "title": "Computed diversification rates",
          "url": "../downloads/tiprates.csv.xz",
          "format": "csv",
          "bytes": 321364,
          "sha256": "8421ed2adb1a1924e6cb221ecca05a3aac6a7c541eb8907ed3f63b11258343ea"
        },
        {
          "role": "name_map",
          "title": "Tree names to FishBase names",
          "url": "../downloads/taxonConversion.csv",
          "format": "csv",
          "bytes": 9305,
          "sha256": "aa4d0bc9b9fb615cd5b8411ebb72351d2ee3ca7b43d688ca79f9e9084e47a05d"
        },
        {
          "role": "alignment",
          "title": "Full alignment",
          "url": "../downloads/final_alignment.phylip.xz",
          "format": "phylip",
          "bytes": 2763172,
          "sha256": "e3bc380052ee0154bc649d3ba4618b8bd4c7807b01a119b37dec3199dd6e625e"
        },
        {
          "role": "partitions",
          "title": "Alignment partitions",
          "url": "../downloads/final_alignment.partitions",
          "format": "raxml-partitions",
          "bytes": 633,
          "sha256": "33dca2eda41877148e5d3827db9e3e4bda1274c67db572e64166ef5e9d707617"
        },
        {
          "role": "calibrations",
          "title": "Fossil calibrations",
          "url": "../downloads/fossil_data.csv",
          "format": "csv",
          "bytes": 72224,
          "sha256": "a00150a3b314b421d980ac8e82175fe57989800f7e01fda769df2944b1dc3c4e"
        }
      ]
    }
  ],
  "taxonomies": [
    {
      "id": "PFC2018",
      "title": "Phylogenetic Fish Classification",
      "citation": "Rabosky, D. L., Chang, J., Title, P. O., Cowman, P. F., Sallan, L., Friedman, M., Kaschner, K., Garilao, C., Near, T. J., Coll, M., Alfaro, M. E. (2018). An inverse latitudinal gradient in speciation rate for marine fishes. Nature, 559(7714), 392–395.",
      "doi": "10.1038/s41586-018-0273-1",
      "license": "CC0-1.0",
      "ranks": [
        "superclass",
        "class",
        "subclass",
        "infraclass",
        "megacohort",
        "supercohort",
        "cohort",
        "subcohort",
        "infracohort",
        "section",
        "subsection",
        "division",
        "subdivision",
        "series",
        "superorder",
        "order",
        "suborder",
        "infraorder",
        "family",
        "genus"
      ],
      "files": [
        {
          "role": "taxonomy",
          "title": "Taxonomy spreadsheet",
          "url": "../downloads/PFC_taxonomy.csv.xz",
          "format": "csv",
          "bytes": 213456,
          "sha256": "074ff977de01f6a618aedc735c9668523d76cfc5c518fa9c829a520b949265f5",
          "species_column": "genus.species"
        },
        {
          "role": "taxonomy_tree",
          "title": "Taxonomy-only tree, used to generate ATA chronograms",
          "url": "../downloads/taxonomy.tre.xz",
          "format": "newick",
          "bytes": 181652,
          "sha256": "6d3df06c768acc3a57bc1bc76bddfdb67d5069dfcbb23243f708a17de55d801b"
        }
      ]
    }
  ]
}
